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04/01/10 The basic working bacterial aligner is complete, next up: Include quality information i.e. fill in a meaningful mapping quality value in the...
02/01/10 Made FastqEntry in a class (it was a struct ), which required the addition of a lot of accessor methods. More importantly, it now has a new MutateBelowThreshold...
Daniel`s January 2010 Research Journal 01/20/10 Spent afternoon familiarizing self with BETA Lab workstation leros and the following NGS aligners (and tool) currently...
07/01/10 Traced bowtie in maq like quality aware alignments The maq like part with seeds and 4 phases confuses me and the results seem inconsistent compared...
06/01/10 Meeting with Jay and Chris, up next: Create a simple minimal locate function Modify the aforementioned function to make a single mismatch locate...
03/01/10 Well, I was planning on doing another large self expository entry for Vigna`s select9 , but due to certain circumstances (including but not limited to the...
05/03/10 Meeting with Chris, some things to do and their status: vectorized SW (assigned to Jay) testing and integration readaligner index integration...
Main page for NGS aligner project Quick facts project directory : /ubc/cs/research/condon/share/projects/ngs aligner blessed code repository : /ubc...
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