This is a wiki for the Zymework internship project communication.
First week: May 1st - May 7th
The intership requires 80% of the time be spend on the project. Since two of us share the intership, each of us needs to spend 40% of our time, which is 2 days each week, for the project. We are required to spend at least 50% of our time on site. Therefore, we decided to spend at least one day in the Company. We will be on site either on Friday, or on Tuesday.
We went through the MD code and especially the parameterization part.
There are two schemes we are considering for the parameterization: fluctuating charge model and electronegativity equalization model.