Here's an updated list of speeds of our aligner vs other aligners:
All run on
skorpios from the /tmp/ directory, timed with time, using the 2622382 reads file.
| Aligner | Exact time (s) | 1-mismatch time (s) | Mismatch:Exact ratio |
|---|---|---|---|
saligner eefcc5 max_results=1 |
64.461 | 94.434 | 1.465 |
saligner 5f7f77, max_results = 10 |
86.937 | 127.223 | 1.46 |
bowtie -m64 (-v 0/1) |
27.115 | 29.966 | 1.105 |
bowtie (-m32 compiled) (-v 0/1) |
41.526 | 46.473 | 1.119 |
readaligner (-k 0/1) |
68.646 | 87.841 | 1.280 |
Edit | Attach | Raw edit | More topic actions
Site map
BETA web
Create New Topic
Index
Search
Changes
Notifications
RSS Feed
Statistics
Preferences
Account 
Copyright © 2008-2024 by the contributing authors. All material on this collaboration platform is the property of the contributing authors. Ideas, requests, problems regarding TWiki? Send feedback