CurrentSpeeds < BETA

Here's an updated list of speeds of our aligner vs other aligners:

All run on =skorpios= from the /tmp/ directory, timed with =time=, using the 2622382 reads file.

|  *Aligner*  |  *Exact time (s)*  |  *1-mismatch time (s)*  |  *Mismatch:Exact ratio*  |
| saligner =eefcc5= max_results=1  |  64.461 |  94.434 |  1.465 |
| saligner =5f7f77=, max_results = 10  |  86.937 |  127.223 |  1.46 |
| bowtie -m64 (=-v 0/1=)  |  27.115 |  29.966 |  1.105 |
| bowtie (-m32 compiled) (=-v 0/1=)  |  41.526 |  46.473 |  1.119 |
| readaligner (=-k 0/1=)  |  68.646 |  87.841 |  1.280 |

This topic: BETA > TipsAndTricks > WebHome > NGSAlignerProject > CurrentSpeeds
Topic revision: r1 - 2010-06-10 - jayzhang