Here's an updated list of speeds of our aligner vs other aligners:
All run on
skorpios from the /tmp/ directory, timed with time, using the 2622382 reads file.
Aligner |
Exact time (s) | 1-mismatch time (s) | Mismatch:Exact ratio |
|---|---|---|---|
bowtie (-m32 compiled) (-v 0/1) |
41.526 | 46.473 | 1.119 |
bowtie -m64 (-v 0/1) |
27.115 | 29.966 | 1.105 |
readaligner (-k 0/1) |
68.646 | 87.841 | 1.280 |
saligner 5f7f77, max_results = 10 |
86.937 | 127.223 | 1.46 |
saligner eefcc5 max_results=1 |
64.461 | 94.434 | 1.465 |
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