Difference: CurrentSpeeds ( vs. 1)

Line: 1 to 1

Added:

>
>

META TOPICPARENT	name="NGSAlignerProject"

Here's an updated list of speeds of our aligner vs other aligners:

All run on skorpios from the /tmp/ directory, timed with time, using the 2622382 reads file.

Aligner	Exact time (s)	1-mismatch time (s)	Mismatch:Exact ratio <-- -->
bowtie -m64 (`-v 0/1`)	27.115	29.966	1.105
bowtie (-m32 compiled) (`-v 0/1`)	41.526	46.473	1.119
readaligner (`-k 0/1`)	68.646	87.841	1.280
saligner `eefcc5` max_results=1	64.461	94.434	1.465
saligner `5f7f77`, max_results = 10	86.937	127.223	1.46