Recent Changes in BETA Web retrieved at 08:34 (GMT)
03/01/10 Well, I was planning on doing another large self expository entry for Vigna`s select9 , but due to certain circumstances (including but not limited to the...
04/01/10 The basic working bacterial aligner is complete, next up: Include quality information i.e. fill in a meaningful mapping quality value in the...
To create an external build (i.e. executables compile in a directory different from source): 1. navigate to the directory where you would like your build to be...
This is how I create new wiki topics here... there may be a smarter way, but I haven`t figured it out: 1. type a WikiWord (multiple words in camel base), in...
meta algorithmic design patterns: tuning/config: input: parametric algorithm A p ; set of benchmark instances I; performance measure m output...
Beta Lab Water Cooler 2009 Update Note from Dave: So Canadian Direct FINALLY gave us (me) our money back for the water cooler and the deposits on all those bottles...
This page lists software we need installed on arrow to run our experiments. If you need something else, please add it to the list and put your name in parentheses...
WestGrid quick user guide This page is part of the EmpiricalAlgorithmics web. Introduction WestGrid operates high performance computing (HPC), collaboration and...
This page exists to give status reports and documentation of the Fall 2009 comparison between Iterated F RACE and ParamILS on various problem domains. These domains...
On this page you can find a library of benchmark problems for algorithm configuration. ChrisFawcett 09 Sep 2009
This page is meant to serve as a central location for all of the algorithm configuration work occurring in BETA. Research in progress can be documented on sub pages...
Bioinformatics Reading Group Summer Schedule, 2009 Please sign up! May 12: Anne Condon May 19: June 9: June 16: Rosalia Aguirre Hernandez...
VoteAbstractsJan2006 AbstractsJan2006 MeetingOct3 MinutesSep19 VoteAbstracts BioinfRGSummer09
Cheat sheet for Matlab user: vs. R Some useful R commands: # command line execution of R scripts: R CMD BATCH help (`write.table) # write data to file:...
Draft Agenda for the next Lab Meeting Time: TBA, see http://doodle.com/2feam2wavsq536i3 Place: X5 Meeting Room next to the lab summer students (implications...
Using Matlab This page is part of the EmpiricalAlgorithmics web. Compiling Matlab Code modification: the `main` function is an m file (myFunction.m...
Beta Lab Tea Date: Tuesday, January 27, 2009 Time: 4:00pm 5:00pm Location: Beta Lab Volunteers We need volunteers to help with the following:...
BETA Lab Party LabTeaJan2009 Date: Tuesday, January 27, 2009 Time: 4:00pm 5:00pm Location: Beta Lab Please plan to attend and if you can volunteer...
Note: a hardware freeze policy has not yet been determined for the Beta lab. We will review the list of Freeze periods entered on this page at the next Beta lab meeting...
hello, world Main.xulin730 01 May 2008
The BETA Lab Library Policies Try not to remove books from the lab Try not to `hog` a book at your desk / terminal for too long If you are going to...
Just made... AndrewCarbonetto 27 Mar 2008
Using CPLEX This page is part of the EmpiricalAlgorithmics web. ILOG CPLEX: Linear, Integer and Quadratic Programming Software Here`s the email explaining CPLEX usage...
Every account needs to be sponsored by a full BETA faculty member. Until the department keeps track of this information, it will be maintained on this page. Please...
Back to MeetingMinutes BETA Meeting: 2008.01.07 Printer . David Kirkpatrick will ask Dave Brent about the status of the new printer purchase....
Notes and minutes from BETA Lab meetings 2007.09.11 2007.05.09 2008.01.07 Template
Back to MeetingMinutes BETA Meeting: YYYY.MM.DD Item One . Discussion Person Name : Action Item A Person Name : Action Item B Item Two...
BETA Christmas Party 2007 Date: Friday, December 14th, 2007 Proposed start time: 4:00pm Location: Room X530 (Beta Lab) Type: Potluck It`s time...
BETA Lab Christmas Party, Wed Dec 20, 2006, at 3:30pm, in room X530. The BETA Lab Christmas Party is getting close, and all of us will surely enjoy it, because we...
The Database (SQL) drop table if exists RUNS JMALT; create table RUNS JMALT ( i INT NOT NULL AUTO INCREMENT, job INT, run file VARCHAR(128), out file VARCHAR(128)...
BETA Web Pages Add comments on the BETA web pages, ideas for changes, errors, links to revised pages, etc. HolgerHoos 20 May 2005 Here are links to first drafts...
MINUTES OF SEPTEMBER 13, 2007 MEETING PRESENT: Dave Tompkins, Dave Brent, David Kirkpatrick, Irmtraud Meyer, Sohrab Shah, Baharak Rastegari, Hosna Jabbari, Chris...
Meeting May 9, 2007: Action items are marked with introduction Bioinformatics reading group time, set to Tuesdays 1:00 2:00 Every once a while, this meeting...
The Arrow cluster and our 22 CPLEX licenses were funded under a CFI grant. This grant requires us to complete annual reports explaining how this infrastructure is...
HosnaJabbari 10 May 2007 %% keep figures from going onto a page by themselves \renewcommand{\topfraction}{0.85} \renewcommand{\textfraction}{0.1} \renewcommand{\floatpagefraction...
Tips and Tricks Here are documents provided by Beta members for cool Tips and Tricks HolgerHoosStyleGuide The guide to writing papers with Holger H. Hoos...
The Holger H. Hoos Style Guide For writing academic papers with Holger H. Hoos Spelling Use British spelling: Colour, neighbourhood, behaviour......
I don`t know what rules there are about how much a student can consult, but I`d imagine that the granting agencies have rules that go along with their scholarships...
HolgerHoos 08 Feb 2006 Use of the ICICS Open Media Environment DRAFT, version 0.3 hh comments and suggestions welcome! See footnotes for explanations. Background...
HolgerHoos 07 Feb 2006 RNA Tertiary Structure Prediction (Holger Anne) Other Research Topics (Anne Holger)
Please write your name next to the papers which are interesting to you. The abstracts are at AbstractsJan2006. H1 Mirela, Rosalia, Dan, Sanja, Baharak H2 H3...
TWiki`s BETA web The 1 web of TWiki. TWiki is a Web Based Collaboration Platform for the Enterprise.
VoteAbstractsJan2006 RNA Journal (suggested by Holger) H1 selection is not required to explain universal compositional patterns in rRNA secondary structure categories...
# read data from file: rtd median(rtd$V2) summary(rtd) V1 V2 V3 Min. :0.0010 Min. : 95 Min. :0....
Metabolic Pathways Background (Rosalia) Paper (Sanja) Paper (Baharak)
Will you want to present a paper on October 3rd? If so, please add your name here (we need at least 3 names, the more the better): Mirela, Sanja, Baharak Please add...
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