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NEW - 2010-05-04 - 02:14 jujubix

To create an external build (i.e. executables compile in a directory different from source): 1. navigate to the directory where you would like your build to be...

CurrentSpeeds

NEW - 2010-06-10 - 23:33 jayzhang

Here`s an updated list of speeds of our aligner vs other aligners: All run on skorpios from the /tmp/ directory, timed with time , using the 2622382 reads file...

DanielsJournal

r110 - 2010-09-02 - 03:27 jujubix

Well... it feels more journal than research... but I guess it gets the job done. 2010 Archive 2010 Archive 2010 Archive 2010 Archive 2010 Archive 2010 Archive...

FixingPermissions

r2 - 2010-08-04 - 20:48 jujubix

We can share files under /ubc/cs/research/condon/people/ or /ubc/cs/research/condon/share/projects/ . You must follow a couple of steps to ensure the group has...

GitWorkFlow

r5 - 2010-05-05 - 06:39 jujubix

Assuming you`ve up a working git repository, the typical work flow is as follows: 1. In your private repo, move to the branch you wish you branch off of,...

JaysJournal

r73 - 2010-09-01 - 19:24 jayzhang

2010 archive 2010 archive 2010 archive 07/30/10 Started to implement the new StaticDNASequence. The build process is going to get a little ugly, but the ranks...

JaysTermTwoJournal

r11 - 2011-02-11 - 00:26 jayzhang

01/05/2011 Started reading more in depth into CUDA. Made some notes (I`ll post them later). Things to do: Finish up the local aligner changes and commit...

NGSAlignerDiscussion

r5 - 2010-05-28 - 18:47 jayzhang

Concerning Multimaps I sort of came to my conclusion about this already, but I`ll spam it here anyway for posterity. When faced when multimaps, there are three modes...

NGSAlignerToDo

r5 - 2010-05-20 - 20:46 jujubix

Specifications File Formats Reads input as FASTQ Alignments output as SAM General Needs Works in letter space with RNA Seq data Works in colour...

RunningAligners

r4 - 2010-05-20 - 05:30 jujubix

Assume for all instances below that a single FASTA reference ref.fasta and a single FASTQ read file reads.fastq are in the same directory as the program executable...

SettingUpGitRepo

r3 - 2010-05-05 - 20:12 jujubix

Setting up a clean private repository: 0. have git installed on your system 1. navigate to the repository where your private ngsa suite repo directory will...

TicGitUsage

r3 - 2010-05-04 - 18:54 jayzhang

ticgit is the issue tracker we`ll be using that`s integrated with git: Setting up RubyGems so gems are installed into your home directory (i.e. on the lab computers...

UsingValgrind

r2 - 2010-05-25 - 18:48 jayzhang

Valgrind is a software suite that includes many useful tools, like a memory checker and a cache profiler. Installation I`m not really sure how to install this on...

WebHome

r33 - 2012-10-04 - 18:12 qhsu

Welcome to the home of BETA. This is a web based collaboration area for members of the BETA Lab. Lab related pages DraftAgenda for next lab meeting MeetingMinutes...

WebStatistics

r5818 - 2025-04-26 - 07:00 TWikiAdminGroup

Statistics for BETA Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top viewers: Top contributors...

WikiTopicCreation

NEW - 2010-05-04 - 02:06 jujubix

This is how I create new wiki topics here... there may be a smarter way, but I haven`t figured it out: 1. type a WikiWord (multiple words in camel base), in...

Number of topics: 16